![]() ![]() parallel_integron_finder.nf which is the workflow itself in nextflow syntax. #ANNOTATE GEM DOWNLOAD#Then we provide 2 files (you need to download them from the IntegronFinder github repo.) #ANNOTATE GEM INSTALL#The workflow use the nextflow framework and can be run on a single machine or a cluster.įirst, you have to install nextflow first, and integron_finder. IntegronFinder in parallel on each replicon (the number of parallel tasks can be limited) then aggregate the results This mean that we cut the data input into chunks (by default of one replicon) then execute If you want to deal with a fasta file with a lot of replicons (from 10 to more than thousand) we provide a workflow to parallelize the execution of the data. Please refer to the documentation of HMMER and INFERNAL for more details. Increasing too much (usually above 4) the number of CPUs used may lower the performance of the software.
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